PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2403_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 450aa    MW: 49803.7 Da    PI: 6.677
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2403_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.59e-12268310754
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  RrC2403_p2 268 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 310
                 79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.866261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-16264330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9267310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.76E-13268314No hitNo description
Gene3DG3DSA:4.10.280.101.2E-15268323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.57E-6379439No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010444Biological Processguard mother cell differentiation
GO:0050826Biological Processresponse to freezing
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MNGDGTWLGE PSQAGDNDES GTWVRNTEEN WFNNPQPLHH NDLRFSGGLP LNPSENLLLL  60
LQQQSIDTSS PLQHFTLDPA PQQQQQQEQS FLATKACFTS LLNVPTSNTN NNPFDELGFS  120
SGFLGQTHVN QTPNSMSFSG LSSPPDFLSS RSTHLPEKTT GVGNRFTPLE FTGVANGVFE  180
NRAKVLKPLD VLASPTSQPT LFQKRAAMRQ SSSSKTCNSE SSSEIRRSSY ERENLDDAST  240
GITDIISDEH NNNNNKGKKK GMPAKNLMAE RRRRKKLNDR LYMLRSVVPK ISKMDRASIL  300
GDAIDYLKEL LQRINDLHTE LESTAPPSSS SLHPLTPTTQ TLSYRVKEEL CPSSSSFPSP  360
KDQQARIEVK LREGKAVNIH MFCGRRPGLL LSTMRALDNL GLDVQQAVVS CFNGFALDVF  420
RAEQCQEGHD VVPEQIKAVL LDTVGYTGLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257275KKKGMPAKNLMAERRRRKK
2269276ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180110.0AK118011.1 Arabidopsis thaliana At1g12860 mRNA for putative bHLH transcription factor (bHLH033), complete cds, clone: RAFL19-21-N13.
GenBankBT0053770.0BT005377.1 Arabidopsis thaliana At1g12860 mRNA, complete cds.
GenBankEU3696700.0EU369670.1 Arabidopsis thaliana bHLH protein (SCREAM2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013604461.10.0PREDICTED: transcription factor SCREAM2-like
RefseqXP_013604462.10.0PREDICTED: transcription factor SCREAM2-like
RefseqXP_013657322.10.0PREDICTED: transcription factor SCREAM2-like
RefseqXP_013657324.10.0PREDICTED: transcription factor SCREAM2-like
RefseqXP_013657325.10.0PREDICTED: transcription factor SCREAM2-like
RefseqXP_013657326.10.0PREDICTED: transcription factor SCREAM2-like
SwissprotQ9LPW30.0SCRM2_ARATH; Transcription factor SCREAM2
TrEMBLA0A078HA670.0A0A078HA67_BRANA; BnaC03g57010D protein
TrEMBLA0A0D3DPE40.0A0A0D3DPE4_BRAOL; Uncharacterized protein
STRINGBra016749.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19522782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.11e-162bHLH family protein